PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 398aa    MW: 42926.2 Da    PI: 9.4804
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.1e-092432801954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yps +++  L++++gL+ +qV++WF N R +
  GSMUA_Achr1P26900_001 243 FEHflHPYPSDADKLLLSRQTGLSRNQVSNWFINARVR 280
                            665559******************************88 PP
2BELL92.54.2e-301211741972
                   BELL  19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            Vd+rY +y++q+q+v++sF+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  GSMUA_Achr1P26900_001 121 VDRRYTHYCDQMQVVVNSFDSVVGFGAAAPYTALAQKAMSRHFRCLKDAIAAQL 174
                            9**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-586172IPR006563POX domain
PfamPF075262.9E-5011171IPR006563POX domain
PROSITE profilePS5007112.163221284IPR001356Homeobox domain
SMARTSM003891.5E-9224288IPR001356Homeobox domain
CDDcd000861.98E-12224285No hitNo description
SuperFamilySSF466893.42E-17225291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28227290IPR009057Homeodomain-like
PfamPF059209.9E-18241280IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGYGAIDAIS VLRNSKYARA AQELLEEFCS VGRGQLTGTK LGRKRGGSSN PNANPSGGGG  60
SSSAAAACSS SPKLDTTPLS SADKFEYQRR KAKLISMLDE ALGRVCSIRS YLTTLAYIVF  120
VDRRYTHYCD QMQVVVNSFD SVVGFGAAAP YTALAQKAMS RHFRCLKDAI AAQLKQTCET  180
LGEKEVASNP GITKGETPRL RLLDQSLRQQ RAFHQIGMMD QEAWRPQRGL PERSVNILRA  240
WLFEHFLHPY PSDADKLLLS RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQEFEGEAGQ  300
SVKGEASHAQ SSQPPQQEGG TSASSSSHRH FGTTPGIPPP DAAVRPHGQS SGGGGGEGIL  360
IQPVRLGATG DVSLTLGLQH AGGNASEKTR FSAGDLGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17230287158Homeobox protein Meis1
4xrs_B3e-17230287158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419353.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_018684237.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ94KL51e-135BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLM0S3E70.0M0S3E7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-118BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]