PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P27990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 248aa    MW: 27771.4 Da    PI: 10.0298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P27990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-1885135256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr++  +g+WvAeIr p +   r+r++lg++ ++e Aa a+++a+ kl+ge
  GSMUA_Achr1P27990_001  85 VYRGVRQRQ-WGKWVAEIRLPQN---RTRIWLGTYYSPESAAYAYDRAAYKLRGE 135
                            7*****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.47185142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2985143IPR001471AP2/ERF domain
PfamPF008474.6E-1285135IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2285143IPR016177DNA-binding domain
SMARTSM003801.2E-3185148IPR001471AP2/ERF domain
CDDcd000188.16E-1986144No hitNo description
PRINTSPR003671.4E-128697IPR001471AP2/ERF domain
PRINTSPR003671.4E-12124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVDRTLETPL PAEFPREFTS SPLDILLCGT TPLRAARSAA ALSIGSSVYH RQAELLRRFS  60
THYHHCGASK DAVASAAETG EKRKVYRGVR QRQWGKWVAE IRLPQNRTRI WLGTYYSPES  120
AAYAYDRAAY KLRGEYARLN FPALQDAGDC PERLRPLQSA VDSKIQAIYQ RLGRRRGAMR  180
DAAVGKKEKS AEEKNRRKKK KNRVTSPTTS SSCAPASSES LAGEMDGECS FSLLPSYDPE  240
LIWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1882149270ATERF1
3gcc_A1e-1882149270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200RRKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679889.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like isoform X2
SwissprotQ8H1E44e-34RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLM0S3Q60.0M0S3Q6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-36ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]