PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P00400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 288aa    MW: 31211.3 Da    PI: 7.9033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P00400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67.1e-11751195698
                            TTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                     B3  56 sgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                            s+++v+tkGW++Fvk+++L +gD+v F +  g+  + +l++ + r
  GSMUA_Achr2P00400_001  75 SQSFVMTKGWSRFVKEKRLAAGDTVSFGRGvGEsGRDRLYIDWKR 119
                            899************************955466566666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-94575IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-1448122IPR015300DNA-binding pseudobarrel domain
CDDcd100178.09E-1149101No hitNo description
SMARTSM010190.009351121IPR003340B3 DNA binding domain
PfamPF023625.3E-874120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-976122IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELTRRKHWK HAPFAPSSSS LSQSSSSAPF RWSDGSSGSG DDDLVEKEHM FDKVVTPSDV  60
GKLNRLVIPK QHAESQSFVM TKGWSRFVKE KRLAAGDTVS FGRGVGESGR DRLYIDWKRR  120
PERLDPIPVP RIPLPGVTFA RSVGPTGGHL YMLPATTTVY GHHGQGYGYN IASMTALEGQ  180
FLYFPPPVTG RPPIEVQPGG GGGLSMVLDP VPVAHSHATA RHVRLFGVNL VCPDAEDDGG  240
VRGVTSSILL QSQQDSALPL LSLPLQQDTL VPSSSMIKEQ HSPSDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-32441221115B3 domain-containing transcription factor NGA1
5os9_B1e-32441221115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126102e-31CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ7270012e-31KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
GenBankKJ8320752e-31KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421479.11e-176PREDICTED: B3 domain-containing protein Os02g0683500-like
RefseqXP_018677750.11e-176PREDICTED: B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU302e-43Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLM0S3Y10.0M0S3Y1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P00400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-38B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]