PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P01820_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 1018aa MW: 113101 Da PI: 6.4704

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P01820_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	8.2e-41	124	200	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+adls+ k+yhrrhkvCe+h+ka++++v++ +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q GSMUA_Achr2P01820_001 124 ACQVEGCDADLSDSKDYHRRHKVCEMHAKASTAVVRNASQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNRRRRKTQ 200 5**************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-34	118	186	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.556	122	199	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.49E-38	123	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-30	125	198	IPR004333	Transcription factor, SBP-box
CDD	cd00204	1.62E-9	717	848	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.5E-6	742	845	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.51E-8	743	851	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence Send to blast
MEARIGGENH QFVAAGTSKL NRIGKKSLEW DLNDWRWDGD RFVASPLNSI PEDCRNKQLH 60 QDTAITLVSN CSSSSSEGVD YRLVDKEKGE AEKRRRIVVG EEDESFGKTG KKSILLGGNS 120 SHPACQVEGC DADLSDSKDY HRRHKVCEMH AKASTAVVRN ASQRFCQQCS RFHLLEEFDE 180 GKRSCRRRLA GHNRRRRKTQ LDVNVNGNSL IDEQACGYLL ISLLRILSNL QSANSDQSQD 240 QELLTNFLGN LATFANSFDP SGLSRLLQAS QDPQKLVTSS GISTDVVITS VPNGVREQES 300 GNPLCSTAVM TCITGTQDPL RQTDHVTSVS VTTVDVPSKE RVASPVIMDF DLNNAYSDTR 360 DCEEGRMNPA TLLSTRMDSS NCPSWLLQSS HQSSPPQTSG NSDTCNQSQT SSHGGAQCRT 420 DRIIFKLFGK DPNDLPLALR TQILDWLSSG PTDIESYIRP GCIVLTIYLQ QAESAWVQLS 480 HDLSSNLSRL LHDSNDFWTT GWIFARVQNC AVFINDGQVV LDMPFPIGDF NHCQGLSVTP 540 IAVACSTKVK FTVKGFNLVQ PTSGLLCSFD GKYLVQETTQ ALVEGTGRDA GHDLSQCLSF 600 TCLLPDVTGR GFIEFEDCGL CNGFFPFIVA EEDVCSEIRM LENAINIASC DGQLQERTDA 660 ANARNQALDF INELGWLLRK NHMRSASEGT KFSQNTFPLR RFRHLMSFAM SREWSAVVKK 720 LLDILFSGTV DADRQSPTEL ALSENLLHSA VQMNSRPMVE LLLRYAPVKA SKETDVDRFL 780 FRPDMLGPLG ITPLHVAASS NGAESILDAL TDDPELLGIK AWNNVRDCIG FTPEDYALAQ 840 GHDSYIRLVQ KKIDKQHHQS QVVLNIPGVV SYELVDALKS GKPNLFQITK SCLSRERQPY 900 CNRCSQKIAY PNSVARTILY RPVMLSLVGI AAVCVCMGLL FKTPPQVFYV FPSFRWELLD 960 YGFISSFLVV DRMAQHQGKL VREILVEFFL LFIELNASSK HVSHCSGKQR DAGNIMMA

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence Send to blast

MEARIGGENH QFVAAGTSKL NRIGKKSLEW DLNDWRWDGD RFVASPLNSI PEDCRNKQLH  60
QDTAITLVSN CSSSSSEGVD YRLVDKEKGE AEKRRRIVVG EEDESFGKTG KKSILLGGNS  120
SHPACQVEGC DADLSDSKDY HRRHKVCEMH AKASTAVVRN ASQRFCQQCS RFHLLEEFDE  180
GKRSCRRRLA GHNRRRRKTQ LDVNVNGNSL IDEQACGYLL ISLLRILSNL QSANSDQSQD  240
QELLTNFLGN LATFANSFDP SGLSRLLQAS QDPQKLVTSS GISTDVVITS VPNGVREQES  300
GNPLCSTAVM TCITGTQDPL RQTDHVTSVS VTTVDVPSKE RVASPVIMDF DLNNAYSDTR  360
DCEEGRMNPA TLLSTRMDSS NCPSWLLQSS HQSSPPQTSG NSDTCNQSQT SSHGGAQCRT  420
DRIIFKLFGK DPNDLPLALR TQILDWLSSG PTDIESYIRP GCIVLTIYLQ QAESAWVQLS  480
HDLSSNLSRL LHDSNDFWTT GWIFARVQNC AVFINDGQVV LDMPFPIGDF NHCQGLSVTP  540
IAVACSTKVK FTVKGFNLVQ PTSGLLCSFD GKYLVQETTQ ALVEGTGRDA GHDLSQCLSF  600
TCLLPDVTGR GFIEFEDCGL CNGFFPFIVA EEDVCSEIRM LENAINIASC DGQLQERTDA  660
ANARNQALDF INELGWLLRK NHMRSASEGT KFSQNTFPLR RFRHLMSFAM SREWSAVVKK  720
LLDILFSGTV DADRQSPTEL ALSENLLHSA VQMNSRPMVE LLLRYAPVKA SKETDVDRFL  780
FRPDMLGPLG ITPLHVAASS NGAESILDAL TDDPELLGIK AWNNVRDCIG FTPEDYALAQ  840
GHDSYIRLVQ KKIDKQHHQS QVVLNIPGVV SYELVDALKS GKPNLFQITK SCLSRERQPY  900
CNRCSQKIAY PNSVARTILY RPVMLSLVGI AAVCVCMGLL FKTPPQVFYV FPSFRWELLD  960
YGFISSFLVV DRMAQHQGKL VREILVEFFL LFIELNASSK HVSHCSGKQR DAGNIMMA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	118	198	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	KRRRI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381220.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBL	M0S4C3	0.0	M0S4C3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P01820_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1