PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P03070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 215aa    MW: 23746.5 Da    PI: 9.1883
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P03070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.6e-41111188178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +Cqv++C+adl eak+yhrrhkvCe+hska+vv+v+gl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk+++
  GSMUA_Achr2P03070_001 111 CCQVDDCAADLREAKRYHRRHKVCEAHSKAAVVVVAGLRQRFCQQCSRFHELAEFDDSKRSCRRRLAGHNERRRKSST 188
                            6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-35104173IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.53109186IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-39110190IPR004333Transcription factor, SBP-box
PfamPF031101.9E-32112185IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDPILPPLPS LTFVPLSSRA FSPNNSTNSS SSSSLPLMEY RRTPIDPASR NSQREKAMKE  60
AALSPTQVAT LGEDEEVMEE DKKRRVSFSS SAAARTGPDA GGGGGGASQP CCQVDDCAAD  120
LREAKRYHRR HKVCEAHSKA AVVVVAGLRQ RFCQQCSRFH ELAEFDDSKR SCRRRLAGHN  180
ERRRKSSTDT QPEGSNRCRE ADLPGNPAYK HFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-38102185184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382775.21e-158PREDICTED: squamosa promoter-binding protein 1-like
TrEMBLM0S4P81e-156M0S4P8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P03070_0011e-157(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.27e-42squamosa promoter binding protein-like 4