PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P03550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YC

Protein Properties

Length: 255aa MW: 28399.7 Da PI: 6.2459

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P03550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.2	4.3e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i++ +P l+ska elf+ +l r++ + + +tl+ s ++++v+ + +dfl+ +v + GSMUA_Achr2P03550_001 7 TRFPASRIKKIMQADEDVGKIASAVPLLVSKALELFLQDLCDRTYEITLHRGAKTLNSSHLKQCVKTYNAYDFLTGVVNK 86 579***********************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.8E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	9.89E-21	4	88	IPR009072	Histone-fold
Pfam	PF00808	4.0E-20	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVGKIASA VPLLVSKALE LFLQDLCDRT YEITLHRGAK 60 TLNSSHLKQC VKTYNAYDFL TGVVNKVPNL GGMEPCEDEK GICRRRKTLP HGDEVESNED 120 LQSRSSKMAM TNANVNPRGR GRGRGRGRGR PPTRHRDVGY VKYEDDSSMF GEHDEAPSAL 180 PGQHEDAEKE STHQSEHPSS TAVTDVAATS PMETKQEQHP AWPVPDGVGS ISIEPSRLVQ 240 LTMQIDEDED YDKED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	148	RGRGRGRGRG
2	139	149	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383427.1	0.0	PREDICTED: dr1-associated corepressor
TrEMBL	M0S4U6	0.0	M0S4U6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P03550_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-49	nuclear factor Y, subunit C11