PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P04070_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 116aa MW: 12801.7 Da PI: 4.4068

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P04070_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H++ H GSMUA_Achr2P04070_001 32 YDCTFCRRGFTTAQALGGHMNIH 54 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.91E-7	30	59	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-4	31	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.157	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEGGEKKQTE PSNDAMDSSE PVKENPGAGR FYDCTFCRRG FTTAQALGGH MNIHRKDRAR 60 TRVSGKKDGE GSGSGGASYD PNVDHQRSYP PVGEEEEEED DEMEEVDLEL RLGHDP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386776.1	6e-63	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	M0S4Z8	1e-79	M0S4Z8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P04070_001	2e-80	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6363	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-13	C2H2 family protein