PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P04520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 162aa    MW: 17690.9 Da    PI: 10.7897
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P04520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-1681116134
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++Cg     Tp++Rrgpdg++tLCnaCGl ++ kg
  GSMUA_Achr2P04520_001  81 CHHCGINAksTPMMRRGPDGPRTLCNACGLVWANKG 116
                            ****865555***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062036.9E-16648IPR010402CCT domain
PROSITE profilePS5101713.314648IPR010402CCT domain
PROSITE profilePS501149.09175133IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-1275128IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-1680122IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.22E-1480129No hitNo description
SuperFamilySSF577163.94E-1280126No hitNo description
PfamPF003204.5E-1481116IPR000679Zinc finger, GATA-type
PROSITE patternPS00344081108IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNVPHRVASL MRFREKRKER NFEKKIRYTV RKEVALRMQR NRGQFTSSKS KTEDSTGGAT  60
TSDANQNWGS PENKIPAASA CHHCGINAKS TPMMRRGPDG PRTLCNACGL VWANKGIMRD  120
LSKNPSPAIL NASPEPKEGQ NNSAEAAISQ SIAVAANGHD TS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384454.11e-117PREDICTED: GATA transcription factor 20
SwissprotQ5Z4U53e-72GAT20_ORYSJ; GATA transcription factor 20
TrEMBLM0S5431e-117M0S543_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P04520_0011e-118(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-46ZIM-like 1