PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P04650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRF

Protein Properties

Length: 431aa MW: 47241.6 Da PI: 8.0418

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P04650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.5	2.7e-24	126	170	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ GSMUA_Achr2P04650_001 126 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 170 79****************************************986 PP
2	QLQ	65.9	9.4e-23	65	100	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+q+L++Q+l+yKyL a++PvPpeLl +i++ GSMUA_Achr2P04650_001 65 PFTAAQWQELEHQALIYKYLTAGVPVPPELLIPIRR 100 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-14	64	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.732	65	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.5E-17	65	99	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.831	126	170	IPR014977	WRC domain
Pfam	PF08879	8.6E-21	127	169	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MISFPHTLSN VQNSACVFIT PVVSMKEIGL VKIYHGSTSV QVKSDSEDEQ HGGGGGGGGW 60 GGRPPFTAAQ WQELEHQALI YKYLTAGVPV PPELLIPIRR SFEALPGRYY HHPALAYCSY 120 YGKKLDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMHRG RNRSRKPVES QSISQLQSAS 180 STTTSLTPTG SSGSVSSGGG LQSIPQYSVA GHSGRQSLCL GASSSLHLPM DPGPYGNSHS 240 GYARLRFFDA LYALISCLLL LSVVIHSTGT CRYFSGVKPG VDEQSFFSEA SGSARGLGMD 300 PVDSSWHLMP SRVSLFPSSK ARDPSPLQSA YTQLQSVQDL GHVTISSMSR QPEQQQHSFI 360 GGEFNSPESV KQESQFLRPF FDEWPKTRDS WSDMEEDRSN RTSYSTTQLS ISFPMSSSDF 420 STTSSKSPND D

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MISFPHTLSN VQNSACVFIT PVVSMKEIGL VKIYHGSTSV QVKSDSEDEQ HGGGGGGGGW  60
GGRPPFTAAQ WQELEHQALI YKYLTAGVPV PPELLIPIRR SFEALPGRYY HHPALAYCSY  120
YGKKLDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMHRG RNRSRKPVES QSISQLQSAS  180
STTTSLTPTG SSGSVSSGGG LQSIPQYSVA GHSGRQSLCL GASSSLHLPM DPGPYGNSHS  240
GYARLRFFDA LYALISCLLL LSVVIHSTGT CRYFSGVKPG VDEQSFFSEA SGSARGLGMD  300
PVDSSWHLMP SRVSLFPSSK ARDPSPLQSA YTQLQSVQDL GHVTISSMSR QPEQQQHSFI  360
GGEFNSPESV KQESQFLRPF FDEWPKTRDS WSDMEEDRSN RTSYSTTQLS ISFPMSSSDF  420
STTSSKSPND D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ315900	6e-39	AJ315900.1 Oryza sativa DNA, clone F10 (C3).
GenBank	AK376404	6e-39	AK376404.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122P12.
GenBank	BT054834	6e-39	BT054834.1 Zea mays full-length cDNA clone ZM_BFb0084L18 mRNA, complete cds.
GenBank	BT066926	6e-39	BT066926.1 Zea mays full-length cDNA clone ZM_BFb0106E18 mRNA, complete cds.
GenBank	CP012614	6e-39	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	EF515851	6e-39	EF515851.1 Zea mays putative growth-regulating factor 12 (GRF12) mRNA, complete cds.
GenBank	EF515853	6e-39	EF515853.1 Zea mays putative growth-regulating factor 14 (GRF14) mRNA, complete cds.
GenBank	EU974389	6e-39	EU974389.1 Zea mays clone 447954 growth-regulating factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677607.1	0.0	PREDICTED: growth-regulating factor 5-like
Swissprot	Q6AWY4	3e-97	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	M0S556	0.0	M0S556_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P04650_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2463	34	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-46	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]