PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P04720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 241aa    MW: 26714.9 Da    PI: 4.9578
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P04720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.3e-17129220198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f  ++++s v +  +l +pkkf  +     ++ + ltl + + + We+++  ++ ++r  + +GWk+Fv++n+Lk gD + F+l++++
  GSMUA_Achr2P04720_001 129 FSIIMSKSQVQRPYQLAIPKKFWPHLP---NTCVPLTL-HFKKKIWEMRYYGDRAQRR--FDGGWKHFVNDNNLKIGDCCFFELMDET 210
                            5567899999************94443...23455663.4688*******33555555..9************************99* PP

                            EE..EEEEE- CS
                     B3  89 efelvvkvfr 98 
                            +f+++v+++r
  GSMUA_Achr2P04720_001 211 DFTFRVQLLR 220
                            ******9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-19125219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-19125218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-19127220No hitNo description
PROSITE profilePS5086312.647129222IPR003340B3 DNA binding domain
SMARTSM010197.0E-10129222IPR003340B3 DNA binding domain
PfamPF023625.1E-15129221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MCRGYLNFYK DCGSAGFEGC EVTAAGQYIW NPARWPGNGA GLLIEEVVVE SCSAISASGG  60
PMSDSSVVLA ACSLTSEESN NHPAGHHVSN CSTNGENNHE DDVSSPNPSE PDISDAEEKT  120
VPLSGKPFFS IIMSKSQVQR PYQLAIPKKF WPHLPNTCVP LTLHFKKKIW EMRYYGDRAQ  180
RRFDGGWKHF VNDNNLKIGD CCFFELMDET DFTFRVQLLR GDLPAECLNN GLSSDRPILI  240
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386873.10.0PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLM0S5630.0M0S563_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P04720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.12e-10VERDANDI