PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P04940_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 132aa MW: 14479.2 Da PI: 6.9463

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P04940_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GSMUA_Achr2P04940_001 30 FRCTYCQRKFHSSQALGGHQNAH 52 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.1E-4	26	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.03E-6	26	57	No hit	No description
Pfam	PF13912	4.6E-6	29	52	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.177	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MEFELEKDDD DVNLELGLEP SSMPQPERVF RCTYCQRKFH SSQALGGHQN AHKLERSLAK 60 RNREVSLAMR SHAVGQIQTV VASTSLDGRF VRKEEAVTLT PWTRGGADGK GRGGGADDKA 120 GIAGDIDLSL RL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384816.1	5e-94	PREDICTED: zinc finger protein STAMENLESS 1-like
Refseq	XP_018675700.1	5e-94	PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBL	M0S585	1e-92	M0S585_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P04940_001	2e-93	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-19	zinc finger protein 2