PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 253aa    MW: 27384.4 Da    PI: 5.8372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002389111123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C++ F ++  L  H++ H
  GSMUA_Achr2P05140_001  89 FSCNYCKRKFYSSQALGGHQNAH 111
                            89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-686116No hitNo description
PROSITE profilePS5015711.26189116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEEEEEEEEE EQRRREEKRE EEGDSTQQLI RKDESKTNFL LDLGLSANDG SSSSSPLLEL  60
NLIGSLGWSN SEPPPPEEAA SPESEPRVFS CNYCKRKFYS SQALGGHQNA HKRERNLAKR  120
GGLGLGDHAA VGYRLSESMG NLPLHGSYAG GPLGMQVHSM IHKPYIGTAA GLMYGRHGWL  180
RSPIANSQPA IGRLLTEEFY GGGRAQPAAK FEEAIAAAAA VGGKHWVGGG GGGGNHLNPR  240
QEELPKLDLS LKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221229GGKHWVGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386961.20.0PREDICTED: zinc finger protein 1-like
RefseqXP_018677692.10.0PREDICTED: zinc finger protein 1-like
TrEMBLM0S5A50.0M0S5A5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-30C2H2 family protein