PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 335aa    MW: 36970.9 Da    PI: 5.504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.81.9e-184695255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r +h++ E+rRR +iN++f+ Lr+l+P++    ++K +Ka+ L +++eYIk Lq
  GSMUA_Achr2P05450_001 46 RSKHSATEQRRRCKINDRFQILRDLIPHS----DQKRDKASFLLEVIEYIKFLQ 95
                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-1942104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.924494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-2344115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-174699No hitNo description
PfamPF000106.3E-164695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1450100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MESVSRSSGE EDEMGRTQRS SRRVELTVNV DGKSGEQKPG TPTTPRSKHS ATEQRRRCKI  60
NDRFQILRDL IPHSDQKRDK ASFLLEVIEY IKFLQEKVQK YESFPGWNQE NEKLMPWSSN  120
QGPRDGIADP PNLTKNGPQS GLLFAGKFVD NSIPRAPTSL SNAHNLAEAD MSPGTVLVPM  180
QSNYYATVGR GSGFMQPQER VISDSDNLVS QTQSEWQSSS CMADCTVSND MLNEQEELTI  240
DEGTISISSV YSQGLLTTVS QAMASAGVDM SQASISVQIN LGRRASRRTT TTNMSSAKDR  300
FDHSPINQVI GDSGRPESNI EGSEQAPKRQ KVDTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385393.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLM0S5D60.0M0S5D6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-64BES1-interacting Myc-like protein 2