PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 155aa    MW: 16841.2 Da    PI: 10.1887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.0002258931454
                           HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           d+i ++ ++L++l+ +      +K + a++L +A+ YIk L
  GSMUA_Achr2P05810_001 58 DKIGERVAKLQQLVSPF-----GKSDTASVLSEATAYIKFL 93
                           67888889999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.8234493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1149107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-850103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MMMTEMVDHK RRSHDGFVVP SKVSGPPRSQ RDSSGEKRLK AGGGAGVGAN ISTKEKKDKI  60
GERVAKLQQL VSPFGKSDTA SVLSEATAYI KFLHDQVQVL SAPYLQTTVI ETVEERECYS  120
LRSRGLCLVP VASTLKIAQS NGADLWAPAN SNRRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1913KRRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385756.11e-112PREDICTED: transcription factor bHLH113-like
RefseqXP_018678094.11e-112PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU22e-44BH153_ARATH; Transcription factor bHLH153
TrEMBLM0S5H21e-111M0S5H2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05810_0011e-112(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5272812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.59e-47bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]