PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 572aa    MW: 62421.2 Da    PI: 7.2834
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14215274155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ k+++lg ++ +++Aa+a++ a++k++g
  GSMUA_Achr2P05880_001 215 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgKQVYLGGYDKEDKAARAYDLAALKYWG 274
                            57*******************666664477446**********99*************98 PP
2AP245.91.4e-14319368355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr2P05880_001 319 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 368
                            9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-17215284IPR016177DNA-binding domain
CDDcd000182.89E-21215284No hitNo description
PfamPF008471.6E-11215274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15216283IPR001471AP2/ERF domain
SMARTSM003802.1E-28216288IPR001471AP2/ERF domain
PROSITE profilePS5103218.966216282IPR001471AP2/ERF domain
PRINTSPR003672.6E-6217228IPR001471AP2/ERF domain
CDDcd000181.07E-23317378No hitNo description
SuperFamilySSF541711.18E-17317378IPR016177DNA-binding domain
PROSITE profilePS5103219.177318376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18318377IPR001471AP2/ERF domain
SMARTSM003801.4E-33318382IPR001471AP2/ERF domain
PfamPF008472.4E-9319368IPR001471AP2/ERF domain
PRINTSPR003672.6E-6358378IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MNNWLGFSPS PQELPPSQAH QTHPSPGIIS GGDVSTDPSS VTPLGVPSQR PDGSFGILET  60
LDAPDHHLQG WSMKSIGYKG SDHELSVLVG SSSNQNTMDE EEQPKLEDYL GGHSFARYDR  120
KLPPIAGNYA DSGGYMLSNG CNNGGLMSST DGCNSSSIGL SMIKAWLRNQ PAPPAPVEGN  180
GSDAAGCTNM IAQSLSLSMK TVPRKSMDSF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  240
EGQSRKGKQV YLGGYDKEDK AARAYDLAAL KYWGASTTTN FPISNYEKEV EEMKHMTRQE  300
YVASLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD  360
IAAIKFRGVN AVTNFDMSRY DVKAILKSSA LPVGGAAKRL DEISDDTEAS VDGSMASHFT  420
ETLGGWPTIA FRQGHPLSCH YPYGQPSGWC KQEQGAMTAA AARRVQDLQQ FNLGSNTQTF  480
FQPSMHQRMM VPDAVIYTGN AGGNYQMDGI TGRNMMPVST MVGNQGQTEG KQMAQVNVLA  540
AGDPYGGRNV YYLSQEDSGH EQTNGSNNWM AS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387085.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ8LSN21e-142BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM0S5H90.0M0S5H9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-135AP2 family protein