PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P06260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 147aa    MW: 16454.2 Da    PI: 6.7609
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P06260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-38171161100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaC++l rkC ++C lapyfpa++p kfa vhk+FGasnv+k+l+ ++e  +eda++s+vyeA+ar++dPvyG++g++l lq+ +e
  GSMUA_Achr2P06260_001  17 PCAACRTLHRKCDHGCLLAPYFPADEPDKFASVHKVFGASNVVKMLQVVKEGMKEDAIKSMVYEAHARLQDPVYGCAGIVLCLQRCVE 104
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+ +l +++e+
  GSMUA_Achr2P06260_001 105 ELQGQLRAVQEQ 116
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.1616117IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3917114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MYMEQKVVME RARLDLPCAA CRTLHRKCDH GCLLAPYFPA DEPDKFASVH KVFGASNVVK  60
MLQVVKEGMK EDAIKSMVYE AHARLQDPVY GCAGIVLCLQ RCVEELQGQL RAVQEQVLEA  120
HLQRDQLASA LMGATEVDAF LYAHCSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-371711811112LOB family transfactor Ramosa2.1
5ly0_B4e-371711811112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386216.21e-105PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR07e-40LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK081e-39LBD11_ARATH; LOB domain-containing protein 11
TrEMBLM0S5L71e-103M0S5L7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P06260_0011e-104(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17783510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-42LOB domain-containing protein 1