PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P06410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 145aa MW: 16610.3 Da PI: 9.7511

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P06410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7.1e-05	96	127	19	50
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqN 50 Fe ++yp+ +e+ LAk++gLt ++++WF N GSMUA_Achr2P06410_001 96 FEHflDPYPNDSEKLMLAKQTGLT--RISNWFIN 127 5544589**************7..7***99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-12	77	138	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-19	81	139	IPR009057	Homeodomain-like
Pfam	PF05920	5.1E-12	94	128	IPR008422	Homeobox KN domain
CDD	cd00086	1.63E-6	95	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MTVSSFDEVV GPEAAKPYTA LDSSDTMIKR IKDKNLECIK ETLLKKKGTT KEEATKEVQQ 60 RRKGVAVLVK QIIQIARRPQ SGLPYSSVSI LCAWLFEHFL DPYPNDSEKL MLAKQTGLTR 120 ISNWFINALV RLWKPMIEDI QRGDW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421536.1	3e-38	PREDICTED: BEL1-like homeodomain protein 7
Refseq	XP_020578415.1	1e-37	BEL1-like homeodomain protein 7
Swissprot	Q9FXG8	3e-33	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	M0S5N2	1e-103	M0S5N2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P06410_001	1e-104	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7715	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	4e-32	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]