PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P06420_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TALE

Protein Properties

Length: 369aa MW: 40716.6 Da PI: 5.3258

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P06420_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.2	2.3e-07	327	359	20	50
HH..SSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 20 ek..nrypsaeereeLAkklgLterqVkvWFqN 50 e ++yp +e+ LAk++gLt +qV++WF N GSMUA_Achr2P06420_001 327 EHflDPYPINSEKLMLAKQTGLTRSQVSNWFIN 359 544489*************************99 PP
2	BELL	44.4	4.2e-15	268	307	1	40
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeav 40 e q+lq k +kLl +l+eV Ykqy +q+qt +ssF++v GSMUA_Achr2P06420_001 268 ETQDLQDKVTKLLAMLDEVLYLYKQYFHQMQTTVSSFDEV 307 5799**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.5E-6	186	331	IPR006563	POX domain
Pfam	PF07526	8.6E-23	199	308	IPR006563	POX domain
CDD	cd00086	2.32E-8	308	360	No hit	No description
SuperFamily	SSF46689	9.84E-12	310	363	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-19	311	363	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-14	324	360	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	9.442	326	363	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MSTFFLNPSN QMDKIPNLHM REPGHYRSSG ASVLGNLQYH NYSSSIAISD TLAAGDTQPQ 60 QNSIELSVSL GSTRGNLDTV TSCTGEHAYG SWKDGKNEMS FMQTVSVAIE DEEDLLHGNE 120 PQISLQRELG MLDRQSLSLQ LSDVSTMPCQ GLSLSLTTQI PVPSIQYLPG SSDLSLFCPH 180 QTTSGSGVSC RNQNYQNMTY LKAGQQLLNE VVNVHKALKQ HSDKAQNLHS SPINSMDKDG 240 TAKSKGEGKS TNPQDSTINS STELSLSETQ DLQDKVTKLL AMLDEVLYLY KQYFHQMQTT 300 VSSFDEVRPQ SGLPDSSVSI LCAWLFEHFL DPYPINSEKL MLAKQTGLTR SQVSNWFINA 360 LVRLCFGSL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MSTFFLNPSN QMDKIPNLHM REPGHYRSSG ASVLGNLQYH NYSSSIAISD TLAAGDTQPQ  60
QNSIELSVSL GSTRGNLDTV TSCTGEHAYG SWKDGKNEMS FMQTVSVAIE DEEDLLHGNE  120
PQISLQRELG MLDRQSLSLQ LSDVSTMPCQ GLSLSLTTQI PVPSIQYLPG SSDLSLFCPH  180
QTTSGSGVSC RNQNYQNMTY LKAGQQLLNE VVNVHKALKQ HSDKAQNLHS SPINSMDKDG  240
TAKSKGEGKS TNPQDSTINS STELSLSETQ DLQDKVTKLL AMLDEVLYLY KQYFHQMQTT  300
VSSFDEVRPQ SGLPDSSVSI LCAWLFEHFL DPYPINSEKL MLAKQTGLTR SQVSNWFINA  360
LVRLCFGSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677298.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_018677299.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_018677309.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X6
Refseq	XP_018677311.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X6
TrEMBL	M0S5N3	0.0	M0S5N3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P06420_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	1e-25	BEL1-like homeodomain 3