PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P06540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 150aa    MW: 17106.4 Da    PI: 8.2592
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P06540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.7e-132685463
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                            k+ +r+++NRe+ArrsR RK+  +++L   + +L +eN++   + +  k+++a++++e+
  GSMUA_Achr2P06540_001 26 QKKLKRMISNRESARRSRMRKQNHLDKLMAQANQLREENTRILATFNITKQHYAAVEAEN 85
                           5999***********************************************999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-152387IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7832588IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-92569No hitNo description
SuperFamilySSF579594.59E-112780No hitNo description
PfamPF001701.2E-92780IPR004827Basic-leucine zipper domain
CDDcd147022.66E-172879No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MASPSAGSSQ LQNSGSEEDL RGVIDQKKLK RMISNRESAR RSRMRKQNHL DKLMAQANQL  60
REENTRILAT FNITKQHYAA VEAENCVLRA QAMELGSRLR SLDEILHFIN ISRHVVLHDD  120
HQMMDGSIGP WSFACMNQPI TAAADDMFYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13946RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386477.11e-110PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L56e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLM0S5P51e-108M0S5P5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P06540_0011e-109(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-41basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]