PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P06700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 169aa MW: 18342 Da PI: 9.0582

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P06700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	9.1e-33	91	144	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+av+ LGG+e+AtPk+ilelm+vk+Ltl+hvkSHLQ+YR+ GSMUA_Achr2P06700_001 91 PRMRWTSSLHARFVHAVDLLGGHERATPKSILELMNVKDLTLAHVKSHLQMYRT 144 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-29	88	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-16	88	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-25	91	145	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-8	92	143	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MPSQGVFTDA IASTGSPDLS LHIGPPSIIT AATSAVDGGF RACVDLPLSS IMCPSEAQEP 60 LRPVDDSSRT VNGTPTRFIP RYQTKRSTRA PRMRWTSSLH ARFVHAVDLL GGHERATPKS 120 ILELMNVKDL TLAHVKSHLQ MYRTIKSTDK TAASSGNLCC FASCVYFVH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	92	146	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	92	146	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	92	146	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	92	146	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	92	146	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413774.2	5e-52	PREDICTED: transcription repressor KAN1-like isoform X2
Refseq	XP_018681942.1	9e-52	PREDICTED: probable transcription factor KAN3 isoform X1
TrEMBL	M0S5R1	1e-122	M0S5R1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P06700_001	1e-123	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-44	G2-like family protein