PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P07840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 375aa    MW: 42183.8 Da    PI: 8.9369
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P07840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-152613699
                           EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           ++l+ +sg+ W+v+l    +s++  +++GWkeFv ++ ++ gDf+vF+l+g s+f   v vf++
  GSMUA_Achr2P07840_001  2 VSLRGPSGKIWDVEL--VDSSNGLRFESGWKEFVVDHAMEIGDFLVFRLEGCSCF--SVLVFDA 61
                           7899***********..********************************988999..8888876 PP
2B349.38.9e-16268359198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f  v+  s+v +   l +p +fa+ h  + + s+ +tl de+g+ W+v++  + + g+  l++GW  F   ++L+  D++vF+l++rs
  GSMUA_Achr2P07840_001 268 FHVVMYDSHVYTGFFLNVPSSFARLHL-P-KISQRITLWDENGKPWKVTYVCCSNCGG--LSGGWGAFSFTQNLEKHDVCVFELIKRS 351
                            6788999****************9994.3.36779***************88888888..9***********************9865 PP

                            EE..EEEEE- CS
                     B3  89 efelvvkvfr 98 
                                +v++fr
  GSMUA_Achr2P07840_001 352 LM--KVHIFR 359
                            55..899987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.776162IPR003340B3 DNA binding domain
CDDcd100171.45E-13160No hitNo description
SMARTSM010190.13162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-18267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-16264IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-11261IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-25259359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-27261359IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-21266359No hitNo description
SMARTSM010192.7E-15268361IPR003340B3 DNA binding domain
PfamPF023624.2E-14268359IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619268361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVSLRGPSGK IWDVELVDSS NGLRFESGWK EFVVDHAMEI GDFLVFRLEG CSCFSVLVFD  60
ATACEKEVAF LAMPSCGNVA TVRQFMHGKE EAVIDRPHLQ DIDTVIDVNN DWEEVQDSKP  120
LVLHPSDVPV VEKKKMRSVD CLAFQGSPLK EACIYPDSLK SKQSKTGPHV KAGCTFVLFV  180
AKTSTYSQSS RTQSLSKKHA GFSPSKQSNE LLKCLRLLKS SEVCRRGEVV AKVQKMPALL  240
SQRRPVTKEE VYNALRKAKS FKSKNPFFHV VMYDSHVYTG FFLNVPSSFA RLHLPKISQR  300
ITLWDENGKP WKVTYVCCSN CGGLSGGWGA FSFTQNLEKH DVCVFELIKR SLMKVHIFRV  360
VDKITPLIQN FRGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1624136422146B3 domain-containing transcription factor VRN1
4i1k_B1e-1624136422146B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389534.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
RefseqXP_009389535.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLM0S6250.0M0S625_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P07840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-18B3 family protein