PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P09150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CPP
Protein Properties Length: 522aa    MW: 57702.3 Da    PI: 8.0984
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P09150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.8e-1362100241
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            +kk+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  GSMUA_Achr2P09150_001  62 RKKNCNCKHSKCLKLYCECFASGVYCDG-CNCANCCNNIE 100
                            689*************************.********976 PP
2TCR51.22.6e-16146185140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  GSMUA_Achr2P09150_001 146 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFE 185
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-1261101IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.97562186IPR005172CRC domain
PfamPF036381.2E-96398IPR005172CRC domain
SMARTSM011145.0E-20146187IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.3E-13149184IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MLQSISYITV EKLLSLPDVS VYYCFLLQRR AHYLTTNLSR KPASPKSRPR PLHDAKDGTP  60
TRKKNCNCKH SKCLKLYCEC FASGVYCDGC NCANCCNNIE NEAARREAVE ATLERNPNAF  120
RPKIGSSPHT LRDSRDEAGE LPLVGKHNKG CHCKKSGCLK KYCECFQANI LCSDNCKCMD  180
CKNFEGSEER KALFRGDHGS ILYMQQATNA ALNGAIGPSG FMSPSAPRKR KNQVLLAGAS  240
VKDQPTQRLA QIPQANASAS GSSFASIPVA CAINTAPAAS TKVTYRSLLA DIVQPEHVRD  300
LCKLLVVVSG EVAKTFSDRR VQERLEEKEG QDESSLRPPN HDRDQSQKDP DMQNALVDEY  360
SSGIPIDKTN TEESGSDSGD GQKGERSMSP GTLALMCDEQ DTIFMTSRAT GTAPRSSNDQ  420
SMSEVYAEQE RCVLMEFRDY LHKLVTYGRM KEEKYSSMSA KYETPYHMES PQNAAARTTM  480
PTAMEMPQML KPIPAYPNKH TPIRQAAIGN GDIKPKIEKS DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-306319411131Protein lin-54 homolog
5fd3_B2e-306319411131Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4848888e-45AM484888.2 Vitis vinifera contig VV78X063253.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389401.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-155TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM0S6F60.0M0S6F6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P09150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-128Tesmin/TSO1-like CXC domain-containing protein