PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P09390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 340aa    MW: 39100.4 Da    PI: 10.1316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P09390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.7e-2020961799
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           ++p kf+++++++  +sk+ +l+ +sg +W v+l   k  + ++lt+GW +Fvk++ L+e +f+vF++dg+++f  +v +f++
  GSMUA_Achr2P09390_001 20 RIPPKFLKHISSV--GSKKAILQGPSGSKWHVEL--GKDMKDTFLTTGWPKFVKDHSLREYEFLVFQYDGDMRF--TVLIFDT 96
                           79*****888877..899****************..999999****************************9999..9999987 PP
2B349.48.3e-16241325799
                            .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                     B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            ps v +   +++pk f +eh  +k++   l+l+d+ g+sW v++    +  r+ +++GW+ F++ n+L+egD +v++l+g    el+v
  GSMUA_Achr2P09390_001 241 PSQVYRP-YMRIPKWFSREHLPPKRS--NLVLRDPCGKSWIVTY--IPS-LRCQISRGWSVFARTNKLEEGDYCVLELIG--PIELRV 320
                            4555555.49**********644444..7***************..444.46679***********************98..67789* PP

                            EEE-S CS
                     B3  95 kvfrk 99 
                            ++fr+
  GSMUA_Achr2P09390_001 321 HIFRA 325
                            99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.5E-121297IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-211799IPR015300DNA-binding pseudobarrel domain
CDDcd100176.05E-191795No hitNo description
PfamPF023626.5E-181996IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-212099IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.6062197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-22227325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-23228324IPR015300DNA-binding pseudobarrel domain
CDDcd100175.45E-20233324No hitNo description
SMARTSM010195.5E-12234326IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38234326IPR003340B3 DNA binding domain
PfamPF023624.9E-14241325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRTSTGLLYG CFSTIVSWKR IPPKFLKHIS SVGSKKAILQ GPSGSKWHVE LGKDMKDTFL  60
TTGWPKFVKD HSLREYEFLV FQYDGDMRFT VLIFDTSACE REDAFAVRPR RKPRQCEGKR  120
KRGRPPKHSP EVGCTIKSEA IEHGMSLELL KDDVQLPNLL QIQPFQQAES GLPYPAPACD  180
VKVKREESEL LINILRNTTK RSKGGRISTR RPLTEKERLR AEEAANSFTS AFPYIVMRMA  240
PSQVYRPYMR IPKWFSREHL PPKRSNLVLR DPCGKSWIVT YIPSLRCQIS RGWSVFARTN  300
KLEEGDYCVL ELIGPIELRV HIFRAVEVEE TLQIAMTPTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RPRRK
2107113RPRRKPR
3108114PRRKPRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867550.0AC186755.1 Musa balbisiana clone MBP_91N22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389369.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLM0S6I00.0M0S6I0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P09390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-20B3 family protein