PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P09660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 317aa    MW: 34409.4 Da    PI: 7.816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P09660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11142189455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+ri +++  L+el+P +    sk + Ka++L + ++Y++sLq
  GSMUA_Achr2P09660_001 142 SHSLAERVRRERISERMKYLQELVPGC----SKIMGKASTLDEIINYVQSLQ 189
                            8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.92E-11136193No hitNo description
SuperFamilySSF474591.3E-17136206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.139138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16138205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MQCPTAPPSS NKLSAGLQHQ QQQQPPPSAH DFTKTIVLAS TPFGMVPDGW TGVADGAQIQ  60
YPVFGAANVG QENASANSFE NSTEKRKAPK SKQESRSSGA EEEGTARGGA TSKNKKKASG  120
SDATKETDYI HVRARRGQAT DSHSLAERVR RERISERMKY LQELVPGCSK IMGKASTLDE  180
IINYVQSLQR QVEFLSMKLA AAEPRMHLSS SNFFDREELN APCNSSSVPV MGVSSDQLKH  240
SGLQLASLQQ DALASCLDVH GCSTWDAGLH GFHDGEIHRG SHLCPGNQCK LDLMVSDVGG  300
TNCRGESKSR IYHFLFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867511e-143AC186751.1 Musa acuminata clone MA4_54N07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389826.10.0PREDICTED: transcription factor BEE 3-like isoform X5
TrEMBLM0S6K70.0M0S6K7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P09660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-45cryptochrome-interacting basic-helix-loop-helix 1