PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P09970_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 432aa MW: 47438.5 Da PI: 9.1388

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P09970_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	117	177	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss GSMUA_Achr2P09970_001 117 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 177 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	114	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	119	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	121	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	123	159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MVDSHCMRVQ AAMDKMASLM CHRRITHHHF SLLSTSSHVP VLVLGLLPPL LPVVLWCLGS 60 SVELCMDTTQ WPQGVGMMMM MPMVDFAPSA TTATAASNTC TGTRAQLTES TRPRSHKEQA 120 LNCPRCNSTN TKFCYYNNYS LTQPRYFCKT CRRYWTEGGS LRNVPVGGGS RKNKRSSHSS 180 ATASTTTTTK STSSIASALT TASTSKKQDL SLAFRQHGLP EYNDYPNLET SSANSSSGAL 240 SAMDLLRGGM TTRGFGSFMP MPEYPTGFGL QEFRPPTLNF DLDGTAGESR SLPGMQVSTS 300 GKLLFPFGDV KPAVPSNMFA EQFEKNKGQA SDPPAFWNGI IGGGRGGGSC FISCWLQLKV 360 DFCCVVIGRP FFLPPFSFCR TSMAIKKGKE RRMVSQFYMN CGLLQRSYGP KEKWQTEKIT 420 HMCISMEPLP DS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MVDSHCMRVQ AAMDKMASLM CHRRITHHHF SLLSTSSHVP VLVLGLLPPL LPVVLWCLGS  60
SVELCMDTTQ WPQGVGMMMM MPMVDFAPSA TTATAASNTC TGTRAQLTES TRPRSHKEQA  120
LNCPRCNSTN TKFCYYNNYS LTQPRYFCKT CRRYWTEGGS LRNVPVGGGS RKNKRSSHSS  180
ATASTTTTTK STSSIASALT TASTSKKQDL SLAFRQHGLP EYNDYPNLET SSANSSSGAL  240
SAMDLLRGGM TTRGFGSFMP MPEYPTGFGL QEFRPPTLNF DLDGTAGESR SLPGMQVSTS  300
GKLLFPFGDV KPAVPSNMFA EQFEKNKGQA SDPPAFWNGI IGGGRGGGSC FISCWLQLKV  360
DFCCVVIGRP FFLPPFSFCR TSMAIKKGKE RRMVSQFYMN CGLLQRSYGP KEKWQTEKIT  420
HMCISMEPLP DS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN977016	4e-49	JN977016.1 Molineria latifolia clone CL27 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389305.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q9SXG8	8e-48	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	M0S6N8	0.0	M0S6N8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P09970_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-35	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]