PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P10230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 304aa    MW: 33262.5 Da    PI: 9.5152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P10230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-11951395799
                            TEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                     B3  57 gryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                            ++yv+tkGW++Fvk++gL++gD++ F +  g+  + +l++ + r+
  GSMUA_Achr2P10230_001  95 QSYVMTKGWSRFVKEKGLQAGDTISFGRGvGDaGRHRLFIDWKRR 139
                            78************************9654777777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-125693IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-1960141IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-1662120No hitNo description
SMARTSM010193.8E-464140IPR003340B3 DNA binding domain
PfamPF023622.2E-894139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-1094144IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEFTHGIRDR LSTTDRREEQ VEVSTHLPFI PSYPLPSSSS TAFRWHDDSS GAGDCASTEK  60
EHMFYKVVTP SDVGKLNRLV IPKQHAEKYF PLDTQSYVMT KGWSRFVKEK GLQAGDTISF  120
GRGVGDAGRH RLFIDWKRRP ENRDPPRIPL PELSFARSAG PWSGRLFVPP EAGCGHTWQG  180
HTYPAAGLGT GGGQCLYYSL PAARPPQMEV QHAGRSGFPM VLGSPLPLVR NQPAVKRVRL  240
FGVTLDCPES GGSVNYNGHS HSVRVPQLHP GAALPLLQSP GTAGESTPSG SSSVYKKQHS  300
QPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-35581412115B3 domain-containing transcription factor NGA1
5os9_B2e-35581412115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175824e-39AC217582.2 Oryza punctata clone OP__Ba0071K23, complete sequence.
GenBankAC2260774e-39AC226077.2 Oryza minuta clone OM__Ba0121K01, complete sequence.
GenBankAC2365464e-39AC236546.1 Oryza minuta clone OM__Ba0198F03, complete sequence.
GenBankAK3666014e-39AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389279.10.0PREDICTED: B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU305e-45Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLM0S6R40.0M0S6R4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P10230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]