PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P10690_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 211aa MW: 22514.8 Da PI: 6.3394

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P10690_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	78	2.7e-24	1	50	24	73
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ GSMUA_Achr2P10690_001 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTIPASFS 50 9********************************************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-19	1	55	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.861	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTIPASFS TTSPSYDRFI 60 AAGGGATIGI GPATGFWALP ARADFGQVWS FAAPEMVASQ HAAFTGTFAG QPMGEASAAR 120 VGNYLPLAGH LNLLASLSGP PDVRVQINSS CSSCILSSYL LYSLDRYICN LLSMRNLILL 180 YAFFGEFLVE HYAAELVVEQ LAESKPKSIL H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	3e-51	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	3e-51	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	3e-51	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	3e-51	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389224.1	3e-81	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	3e-45	TCP7_ARATH; Transcription factor TCP7
TrEMBL	M0S6W0	1e-153	M0S6W0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P10690_001	1e-153	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-44	TCP family protein