PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P11810_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 290aa MW: 32331.7 Da PI: 6.786

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P11810_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.7	4e-48	9	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp GfrF+Ptd elv++yLk k++g+ ++ evi+e+d++k+eP dLp k +k+ ++ew+fF+++dkky++++r+nrat++gyWk t GSMUA_Achr2P11810_001 9 LPLGFRFRPTDVELVNHYLKGKISGRIKSEVEVIPEIDVCKYEPCDLPdKsLTKSVDSEWFFFAPKDKKYPNSNRSNRATEAGYWKPT 96 699*********************999989***********96434455677************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ ++s + +g+kktLvf+ grapkg++t+W+mheyr GSMUA_Achr2P11810_001 97 GKDRMIKSGsaCPAIIGMKKTLVFHLGRAPKGVRTNWIMHEYRT 140 ***96444456*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-55	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	54.021	9	161	IPR003441	NAC domain
Pfam	PF02365	5.4E-26	10	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MVVLSAKSLP LGFRFRPTDV ELVNHYLKGK ISGRIKSEVE VIPEIDVCKY EPCDLPDKSL 60 TKSVDSEWFF FAPKDKKYPN SNRSNRATEA GYWKPTGKDR MIKSGSACPA IIGMKKTLVF 120 HLGRAPKGVR TNWIMHEYRT LESESVSGEQ GGFVLCRLFR KPEEKTPIFD NDDFTQRNVD 180 EMESSGLFAP ATPSPGETLH GVEATEEVVT PLNQKNLGSD LQEILQPLPL KTNVQPSGVN 240 GLAADKTDIT RSYPLKPEES HCNDTIVSDA ANHGTVLGSE VRNRQIFVFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-44	4	161	15	168	NAC domain-containing protein 19
3swm_B	4e-44	4	161	15	168	NAC domain-containing protein 19
3swm_C	4e-44	4	161	15	168	NAC domain-containing protein 19
3swm_D	4e-44	4	161	15	168	NAC domain-containing protein 19
3swp_A	4e-44	4	161	15	168	NAC domain-containing protein 19
3swp_B	4e-44	4	161	15	168	NAC domain-containing protein 19
3swp_C	4e-44	4	161	15	168	NAC domain-containing protein 19
3swp_D	4e-44	4	161	15	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389125.1	0.0	PREDICTED: protein NTM1-like 9
Swissprot	F4JN35	3e-67	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	M0S772	0.0	M0S772_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P11810_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-69	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]