PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P12610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 412aa    MW: 43980.8 Da    PI: 5.1823
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P12610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.61e-16202254355
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                            e++r rr+ +NRe+ArrsR+RK+a + eLe  v eL+ eN++L k+l  ++++
  GSMUA_Achr2P12610_001 202 ERRRMRRMLSNRESARRSRRRKQAHLSELEGQVSELKIENSTLLKRLTDINQK 254
                            7899****************************************999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-17199264IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.507202254IPR004827Basic-leucine zipper domain
PfamPF001701.8E-14202254IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.9E-13204254No hitNo description
SuperFamilySSF579594.88E-12204254No hitNo description
CDDcd147022.87E-7205255No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
PfamPF124984.5E-40271387IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MERVFSADEI ADSFWAASPA SAGLPSPTGA AMSRCPSEWY LEKFLEEAAA FSAPSPNPSL  60
NANQNNCNTV PYPPSAVVEI KAPFGPPAAV DPGNYQALLK QKLDVICAAV AMSRSSSVNP  120
QNSASVADSR SPISDASQFG SQVPVKGDGP GGVPALSILQ NSGTQGKPAT SGSSRDQSDD  180
DDDDDDELEG EAETNENMDP AERRRMRRML SNRESARRSR RRKQAHLSEL EGQVSELKIE  240
NSTLLKRLTD INQKYGDAAV GNRILKADVE TLRAKVKMAE ETVKRVTGVC PLYPIISEMS  300
NISLPFNGSS SDATSNVVIP VHDDTNHFFH VSAYDQRKNT CLPDIGIPPT VEDAVHGAVA  360
AGKTAGAASM RQADSLEHPH KRILGGPNSS PEWNSAAAWD PKTSVTGKKN QG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202222RRRMRRMLSNRESARRSRRRK
2216223RRSRRRKQ
3218223SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6206381e-132JX620638.1 Gossypium hirsutum clone NBRI_GE66926 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389020.10.0PREDICTED: light-inducible protein CPRF2-like isoform X1
SwissprotQ7X9A81e-89RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLM0S7F20.0M0S7F2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P12610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-42bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]