PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P12730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 228aa    MW: 24503.9 Da    PI: 8.1404
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P12730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18157191135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
  GSMUA_Achr2P12730_001 157 CSHCLSQKTPQWRAGPLGPKTLCNACGVRFKSGRL 191
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.082151187IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-16151205IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15153215No hitNo description
Gene3DG3DSA:3.30.50.107.8E-14155189IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.36E-13156203No hitNo description
PfamPF003206.8E-16157191IPR000679Zinc finger, GATA-type
PROSITE patternPS003440157182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAACIMEFTT SLALPSSSSS SSSSSSSSFV LCLWLVVQLK MDTCNKSSSA GSSLLEEFIP  60
GDNMVEGEDE SLEWLSIYVE DCLSGATSYT TTTTTTTISK PLPPTARLPQ NPDPKPSCRS  120
LASELILPIK EEGGKTAAAG GGRVGEEEKV VVQPRRCSHC LSQKTPQWRA GPLGPKTLCN  180
ACGVRFKSGR LLPEYRPAKS PTFVSYKHSN SHKKVMEMRM ALLSSNST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389002.11e-113PREDICTED: GATA transcription factor 12-like
SwissprotQ8L4M62e-42GATA3_ARATH; GATA transcription factor 3
TrEMBLM0S7G41e-165M0S7G4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P12730_0011e-166(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.28e-38GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]