PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P12850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 208aa    MW: 23014.6 Da    PI: 8.882
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P12850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY217.93e-6721782170
                  YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee................lle 73 
                            + +  +e++Cyv+CnfCnt+lavsvP +sl+++vtvrCGhC++llsvn+    q+l+ +s l+++ +e+                +  
  GSMUA_Achr2P12850_001   2 SAQVLPEHICYVHCNFCNTVLAVSVPGNSLLNIVTVRCGHCSNLLSVNMGALLQALPFQS-LQHARRESklpmsinyivfllvkaIIF 88 
                            567889***************************************************999.788888778999****99986554444 PP

                  YABBY  74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                            +  ++++ ++     +++++ts    ++++++++ +p     ++PPekr r+Psaynrfikeeiqrika+nPdishreafs+aaknWa
  GSMUA_Achr2P12850_001  89 DICSQGNGVECGSP-SKCKRTSLLC-TMPKDQEQTLP-----MHPPEKRHRAPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWA 169
                            44444444444333.3333333333.46888888888.....69******************************************** PP

                  YABBY 162 hfPkihfgl 170
                            hfP+ihfgl
  GSMUA_Achr2P12850_001 170 HFPRIHFGL 178
                            *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-707178IPR006780YABBY protein
SuperFamilySSF470958.9E-9115171IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.4E-6125172IPR009071High mobility group box domain
CDDcd013906.70E-6132168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSAQVLPEHI CYVHCNFCNT VLAVSVPGNS LLNIVTVRCG HCSNLLSVNM GALLQALPFQ  60
SLQHARRESK LPMSINYIVF LLVKAIIFDI CSQGNGVECG SPSKCKRTSL LCTMPKDQEQ  120
TLPMHPPEKR HRAPSAYNRF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPRIHFGLNI  180
DGNKQAKLDE PVSAPANTPG GQKGHSFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7952762e-55KT795276.1 Strelitzia sp. KM-2016 isolate 116 YABBY2 (YABBY2) mRNA, partial cds.
GenBankKT7952772e-55KT795277.1 Strelitzia sp. KM-2016 isolate 117 YABBY2 (YABBY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389764.11e-129PREDICTED: protein YABBY 2-like
SwissprotQ10FZ75e-68YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0S7H61e-154M0S7H6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P12850_0011e-154(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-59YABBY family protein