PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P13170_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 174aa MW: 18616.1 Da PI: 8.5094

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P13170_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.9e-43	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cv+apyfpa++p+kfa+vh++FGasnv+kll+++ ++r da+sslvyeA+ar+rdPvyG+v+ i++l++q++ GSMUA_Achr2P13170_001 13 PCAACKLLRRRCTQECVFAPYFPADEPHKFAIVHRVFGASNVSKLLQEIAVQHRGDAVSSLVYEANARVRDPVYGCVAAISSLHRQIQ 100 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+a+la+++++ GSMUA_Achr2P13170_001 101 ALQAQLAVAHAQ 112 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.34	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-43	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MTEEGRKNST VSPCAACKLL RRRCTQECVF APYFPADEPH KFAIVHRVFG ASNVSKLLQE 60 IAVQHRGDAV SSLVYEANAR VRDPVYGCVA AISSLHRQIQ ALQAQLAVAH AQMAHLRTQN 120 AACLDRVGLG HGQISMGGTG CSTSTGSSSS LSPKHHTLDT VALDQPGSSQ PPVW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	12	113	10	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	12	113	10	111	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226046	0.0	AC226046.1 Musa acuminata clone BAC MA4-72F16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388947.1	1e-127	PREDICTED: LOB domain-containing protein 4 isoform X1
Refseq	XP_018677715.1	1e-127	PREDICTED: LOB domain-containing protein 4 isoform X1
Swissprot	Q9SA51	2e-55	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	M0S7K8	1e-126	M0S7K8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P13170_001	1e-126	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-51	LOB domain-containing protein 4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]