PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P13400_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 241aa MW: 26457 Da PI: 8.6827

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P13400_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.1	7.6e-25	8	65	1	58
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredam 58 +CaaCk+lrrkC++ Cv+apyfp +qp kfa vh++FGasnv kll++l++++reda GSMUA_Achr2P13400_001 8 PCAACKLLRRKCTPACVFAPYFPPDQPTKFASVHRVFGASNVAKLLNELSPSQREDAH 65 7*****************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.823	7	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-24	8	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSPSTSSPCA ACKLLRRKCT PACVFAPYFP PDQPTKFASV HRVFGASNVA KLLNELSPSQ 60 REDAHQLNQV QRDLYDAKKE LSTYLSAPIA DPQKPAHQLL HYRQRLQGAS PSAAPPTVTV 120 MTLGLATPEA SSHQQILMHE LQQQMAAVQQ IAETAVASTR EQEMLRSYEQ QQKEHARFSA 180 VSMEGGGRGY CPTAFEGLLC VQQQHTPKQQ VLPMGRSSGH HHERSGALAL DTCRLSFPGK 240 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-29	2	64	5	67	LOB family transfactor Ramosa2.1
5ly0_B	3e-29	2	64	5	67	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389756.1	1e-172	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	M0S7N1	1e-176	M0S7N1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P13400_001	1e-177	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-35	ASYMMETRIC LEAVES 2-like 1