PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P13410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 243aa    MW: 25278.3 Da    PI: 7.8928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P13410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.0007488110123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ykC+ Cgk F +   L  H  +H
  GSMUA_Achr2P13410_001  88 YKCSVCGKAFGSYQALGGHKTSH 110
                            9*********9998888887776 PP
2zf-C2H211.90.0007145167123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C k+F++   L  H r+H
  GSMUA_Achr2P13410_001 145 HQCSVCLKTFPSGQALGGHKRRH 167
                            79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.1E-1388112IPR007087Zinc finger, C2H2
SMARTSM003550.01388110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.80388115IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-988110No hitNo description
Gene3DG3DSA:3.30.160.602.5E-488110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-9140167No hitNo description
PROSITE profilePS501579.058145167IPR007087Zinc finger, C2H2
PfamPF139127.8E-13145169IPR007087Zinc finger, C2H2
SMARTSM003550.089145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAIEAVEIRT TASIPPPSAE MSDEELPHIE GWAKRKRSKR HRFFDHPPTE EEYLALCLVM  60
LARDGSGHRP PSLTSDSEAA PPPAKFQYKC SVCGKAFGSY QALGGHKTSH RKPTGGADEA  120
SVASTAASAS GSSTAGAASG GGRLHQCSVC LKTFPSGQAL GGHKRRHYEG SLGSSAAAVA  180
PATSEGASSS HRGLDLTVAA LPEFEFDGVR RCLAAAAAAT AAAEDEEVQS PLAFKKPRLL  240
IPT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388925.11e-175PREDICTED: zinc finger protein 1-like
TrEMBLM0S7N21e-173M0S7N2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P13410_0011e-174(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-49salt tolerance zinc finger