PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P13440_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 209aa MW: 22280.2 Da PI: 8.1442

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P13440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.1	5.6e-28	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++ Cvl+p++ +++q++++ +v+k+ G+s++l++l+++p ++r++a++sl+yeA+ r+ +Pv+Ga+g+++++ GSMUA_Achr2P13440_001 2 SCSGCRVLRKGCSDTCVLRPCIqwidgADAQAHATVFVAKFVGRSTLLSFLSSVPLSHRPAAFRSLLYEACGRTINPVNGATGLLWTG 89 6*******************9999777899**************************************************** PP DUF260 84 qqqleqlkaela 95 +++l+q++++++ GSMUA_Achr2P13440_001 90 NWHLCQAAVDTV 101 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.701	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSCSGCRVLR KGCSDTCVLR PCIQWIDGAD AQAHATVFVA KFVGRSTLLS FLSSVPLSHR 60 PAAFRSLLYE ACGRTINPVN GATGLLWTGN WHLCQAAVDT VLGGGTIRPL LELGGDADVE 120 ELYRYQKGGA SSSSSSPPRK RTKDPESKVT PKFDLDLCLM PRSPEAQGKG NWRASTPSAT 180 SESSVTTTNE GCAGDKTAEE KPTLLNLFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388922.1	1e-153	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SN23	2e-63	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	M0S7N5	1e-152	M0S7N5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P13440_001	1e-153	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	6e-65	LOB domain-containing protein 38