PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P13650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28274.6 Da    PI: 9.6974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P13650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeys+
  GSMUA_Achr2P13650_001  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59
                           79***********************************************96 PP
2K-box106.72.7e-35821748100
                  K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                            s ++  + +++qe+ kLk+++e L ++qRhl+Ge+Le L+lkeLqqLe+qLe slk+iRs+Kn++++++i elqkkek+lq +nk+L+
  GSMUA_Achr2P13650_001  82 SSDQDYQGNWCQEYGKLKAKVEALSKSQRHLMGEQLEALNLKELQQLEHQLEISLKHIRSRKNQVMFDSIAELQKKEKALQAANKTLE 169
                            455666789******************************************************************************* PP

                  K-box  96 kklee 100
                            ++l+e
  GSMUA_Achr2P13650_001 170 QELME 174
                            *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.912161IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-34286IPR002100Transcription factor, MADS-box
CDDcd002659.25E-42276No hitNo description
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-3083172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.6388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTD  60
SSMEKILERY EYYSYAEKAL MSSDQDYQGN WCQEYGKLKA KVEALSKSQR HLMGEQLEAL  120
NLKELQQLEH QLEISLKHIR SRKNQVMFDS IAELQKKEKA LQAANKTLEQ ELMEKQKIKA  180
ITQQAHWEQA QTSSSSPPPL IAEPQPTLNI GCYQGMALAV REEASRLPVR ISNSLLPPWM  240
LRHLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22184183MEF2C
5f28_B3e-22184183MEF2C
5f28_C3e-22184183MEF2C
5f28_D3e-22184183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388901.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-100AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLM0S7Q60.0M0S7Q6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P13650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]