PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P14600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 240aa MW: 25988.5 Da PI: 7.6237

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P14600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.1	1.8e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a p++ r+++ +sl+yeA+ r+ dPvyG+vg+++++ GSMUA_Achr2P14600_001 2 SCNGCRVLRKGCSDGCTIRPCLqwirsPEAQANATVFLAKFYGRAGLINLINAGPPHLRPAIYRSLLYEACGRIIDPVYGSVGLLWSG 89 6************************************************************************************* PP DUF260 84 qqqleqlkaelallk 98 +++++q+++e +ll+ GSMUA_Achr2P14600_001 90 SWRVCQAAVESVLLR 104 ******9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.634	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-25	2	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSCNGCRVLR KGCSDGCTIR PCLQWIRSPE AQANATVFLA KFYGRAGLIN LINAGPPHLR 60 PAIYRSLLYE ACGRIIDPVY GSVGLLWSGS WRVCQAAVES VLLRGEPATR FPADATDPKP 120 HDIRCMTRIP SDIGAGANCD LHKATANSRV RFKRSANALR PPSSPSSDPF AEGMHQTEAE 180 GKLPEETVQE DDADELDLTL GFEPAARGAA GGRGPVIRQN GEGTAWFSEG CPEDLRLRLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388795.1	1e-177	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	3e-66	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	M0S801	1e-176	M0S801_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P14600_001	1e-177	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-67	LOB domain-containing protein 41