PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 210aa    MW: 23262.8 Da    PI: 9.9646
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind26.32.1e-08177169
              GAGA_bind  1 mdddg..sre.rnkgyyepaaslkenlglqlmssiaerdaki.......rernlalsekkaavaerdmaflqrdkalae 69
                           mdddg    + rn+gyye++   k nlgl+lmss+ erd+k+        +r+  +se+  +  ++d +f   d  + e
  GSMUA_Achr2P15130_001  1 MDDDGdgGLDiRNWGYYEQT--WKGNLGLHLMSSVVERDTKPllsnggfLHRQCGVSEPLLPEPPKDDNFPVTDIPVGE 77
                           56654114569*******99..9******************96666666334444566555556677777666666555 PP
2GAGA_bind2486e-7681210172301
              GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
                            + +k+++ ++++ ++ k++kks ++v+ng+sl++s++P+PvCsCtG+++ CY+WG+GGWqS CCtt+iS+yPLP+stkrrgaRiagrK
  GSMUA_Achr2P15130_001  81 PLKKRSKGRPQKFPKPKKSKKSAEMVINGISLNTSGIPTPVCSCTGKPQPCYRWGAGGWQSVCCTTSISMYPLPMSTKRRGARIAGRK 168
                            4556666677766999************************************************************************ PP

              GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            mSqgafkk+LekL++eG++l np+DL+++WAkHGtnkfvtir
  GSMUA_Achr2P15130_001 169 MSQGAFKKVLEKLTEEGHSLCNPIDLRSFWAKHGTNKFVTIR 210
                            *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.9E-1021210IPR010409GAGA-binding transcriptional activator
PfamPF062174.6E-8146IPR010409GAGA-binding transcriptional activator
PfamPF062173.1E-7283210IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDDDGDGGLD IRNWGYYEQT WKGNLGLHLM SSVVERDTKP LLSNGGFLHR QCGVSEPLLP  60
EPPKDDNFPV TDIPVGENET PLKKRSKGRP QKFPKPKKSK KSAEMVINGI SLNTSGIPTP  120
VCSCTGKPQP CYRWGAGGWQ SVCCTTSISM YPLPMSTKRR GARIAGRKMS QGAFKKVLEK  180
LTEEGHSLCN PIDLRSFWAK HGTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677856.11e-122PREDICTED: protein Barley B recombinant
RefseqXP_018677857.11e-122PREDICTED: protein Barley B recombinant
SwissprotQ9SKD07e-68BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLM0S8541e-154M0S854_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15130_0011e-155(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.12e-59basic pentacysteine 3