PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 183aa    MW: 20058.1 Da    PI: 12.2527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000451211551554
                            HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++++++  L +l+P +     + ls a+ Le+A +Y+  L
  GSMUA_Achr2P15220_001 121 KVRDRLRALGRLVPGC-----ENLSTASLLEEAADYVAAL 155
                            7899999********9.....78*************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-8121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8121169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MIMIMISTDA SAPAKRRTKP SPPENKWRTG ARERAYRSRL LEALRAAGER RASGPRAVKE  60
AADSALALTA RGQSRWSRAV LLRRRSRLLV RAGGRIRRRK RPRRRPVGPT PGTGQPEEGK  120
KVRDRLRALG RLVPGCENLS TASLLEEAAD YVAALEMQVK AMRTLADDLS AAAASGNGRR  180
AEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182100RRRSRLLVRAGGRIRRRKR
294102RIRRRKRPR
394104RIRRRKRPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388734.21e-118PREDICTED: transcription factor bHLH149-like
TrEMBLM0S8631e-121M0S863_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15220_0011e-122(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165858
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.26e-11bHLH family protein