PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 220aa    MW: 25247.2 Da    PI: 11.8389
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind41.43.9e-132210215102
                            GTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  15 lkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                            ++ +i w ++g+     + + +a+   p+ F+hsnf+SFvRQLn+Y    ++  +         w+F+h sF +g+++ l ++ r++s
  GSMUA_Achr2P15590_001  22 TDAVIAWGRDGKLRGRRPLRLLAE-PPPENFRHSNFSSFVRQLNTYVSIALRAVDLG------RWQFAHASFLRGQTHPLVQMVRRNS 102
                            566777777755555555555555.6789*****************99999999977......8******************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-719100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-1020100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.3E-1021100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-1321100IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKDSGRSNGG QHQQRHRHGA STDAVIAWGR DGKLRGRRPL RLLAEPPPEN FRHSNFSSFV  60
RQLNTYVSIA LRAVDLGRWQ FAHASFLRGQ THPLVQMVRR NSGCGKEEED EERVTAELVR  120
LIQEQRRVEE RVERMWRRVQ EMEADAGFPG QHGWGLQAAR RDRWTGEASS VSIGRRREDG  180
GDGRWSWFLA ARWPGGGGGR WSLEGWRTGV MLHIRSPAHR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381200.15e-34PREDICTED: heat stress transcription factor C-2b-like
SwissprotQ6EUG42e-28HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLM0S8A01e-155M0S8A0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15590_0011e-156(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-14heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]