PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 224aa    MW: 24221 Da    PI: 8.0079
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.2e-382080262
                 zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                           +e++l+cprCdst+tkfCyynn+++sqPr+fCk+CrryWtkGG lrn+PvGgg+rkn k+s
  GSMUA_Achr2P15700_001 20 PEQNLRCPRCDSTDTKFCYYNNHNISQPRHFCKSCRRYWTKGGMLRNIPVGGGTRKNSKRS 80
                           78999****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-22669IPR003851Zinc finger, Dof-type
PfamPF027011.7E-322278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6022478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQDSTASAAF QAAMTRFPEP EQNLRCPRCD STDTKFCYYN NHNISQPRHF CKSCRRYWTK  60
GGMLRNIPVG GGTRKNSKRS GSSSSSSSAA YSCKRPNPSR PPSHLADLPK TEPVSVLYPP  120
LDPDRHLLDM TGSFSSLLAS DGHLETILES FHPVCGGDVT VLPNSASAIR SGIHIQGMEL  180
QGSVSNSNTP AAAVENSERL EGAPGCWAAS WTDLAIYNPG SNMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9658595e-47EU965859.1 Zea mays clone 289437 dof zinc finger protein MNB1A mRNA, complete cds.
GenBankEU9693885e-47EU969388.1 Zea mays clone 329608 dof zinc finger protein MNB1A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388681.11e-167PREDICTED: dof zinc finger protein DOF1.7-like
RefseqXP_018677691.11e-167PREDICTED: dof zinc finger protein DOF1.7-like
SwissprotO821554e-40DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLM0S8B11e-166M0S8B1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15700_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-31DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]