PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P16080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 194aa    MW: 21571.4 Da    PI: 8.1295
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P16080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.2e-21666257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr2P16080_001  6 STRWCPTPEQLMILEEMYRSgVRTPNASQIQQITAHLslygRIEGKNVFYWFQNHKARERQ 66
                           58*****************99**************************************97 PP
2Wus_type_Homeobox122.61.5e-39567264
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaRerqk
  GSMUA_Achr2P16080_001  5 PSTRWCPTPEQLMILEEMYRSGVRTPNASQIQQITAHLSLYGRIEGKNVFYWFQNHKARERQK 67
                           689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.398267IPR001356Homeobox domain
SMARTSM003892.4E-7471IPR001356Homeobox domain
CDDcd000862.49E-5567No hitNo description
PfamPF000469.2E-19666IPR001356Homeobox domain
SuperFamilySSF466891.07E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-8866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NASQIQQITA HLSLYGRIEG KNVFYWFQNH  60
KARERQKLRR RLGRQHQLLH QSEGPSSPTP PLHNQTPPPN LLYQGCLQEV LTQGMNLVGK  120
LEAGEGQEEE PAASDAVYTQ PWMTMMDGSA AAATAVPPPC CRPLKTLDLF PTKSTGMKDE  180
CSSSKSSSCS TSTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388641.11e-144PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLM0S8E91e-142M0S8E9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P16080_0011e-143(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-35WOX family protein