PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P16390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 334aa    MW: 36994.5 Da    PI: 8.5389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P16390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30116173258
                            --SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            +Dgy+WrKYGqK++k++++p rsYYrCt ++C++k++vers+edp++++itYeg H h
  GSMUA_Achr2P16390_001 116 EDGYKWRKYGQKTIKNNPNPsRSYYRCTNPRCSAKRQVERSKEDPNMLTITYEGLHLH 173
                            8******************889**********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.778110173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-27112174IPR003657WRKY domain
SuperFamilySSF1182903.53E-24113174IPR003657WRKY domain
SMARTSM007744.6E-33115175IPR003657WRKY domain
PfamPF031061.1E-23116173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAQVKEPEIY WHDESEKELL GELSAEASPP FVSSKAADGG TAGSLRHVPN TLISSAYSGP  60
TIEDIERALS TKVPDVRATS HLPVRACRAP VPEKGIGKSD TKYAVMIKSC GGGVAEDGYK  120
WRKYGQKTIK NNPNPSRSYY RCTNPRCSAK RQVERSKEDP NMLTITYEGL HLHYPHFHVL  180
RRRPQDHTAT KLQVPKKPKL QGEEQLHKDY KSQSIQGELR EEVVAVTSGE SSPGSPDRGL  240
EEEATLNPGA GKQNMRPRDA VQYPQGLLQD VVPLLIREPC STGSAVSSYH HYHFFPTPCP  300
SYYSASISPP TNPSDIDLGL HFRHSLNLKQ SKDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-171141731674Probable WRKY transcription factor 4
2lex_A1e-171141731674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389718.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLM0S8I00.0M0S8I0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P16390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.16e-38WRKY DNA-binding protein 49