PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P16470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 232aa    MW: 26228.4 Da    PI: 7.597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P16470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156385123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C + F++   L  H+++H
  GSMUA_Achr2P16470_001 63 YSCSFCRREFRSAQALGGHMNVH 85
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-66089No hitNo description
PROSITE profilePS5015711.2196390IPR007087Zinc finger, C2H2
SMARTSM003550.00986385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERSKYWMWS RDLSEKPSIG SQIREAVPAV TSSYVHHATW EERAFAEDSA GHIGGYIWPP  60
RSYSCSFCRR EFRSAQALGG HMNVHRRDRA RLKQSLSPTG DDSDHDRPHH SSQRPYMPSA  120
SPLSPRVSAA STPEVSTYAL LSPSYSSSIV QENEPDSCLD PDLKLGSETL NLRDLSKDDE  180
EHLTVKKRRT DLKCSSISMR SSMAVQQKLP CPVEELDLEL RLGQKRKPVM VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135885229superman protein
2l1o_A3e-135885229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388607.11e-171PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0S8I81e-169M0S8I8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P16470_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-27zinc-finger protein 10