PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P16550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 230aa MW: 25619.2 Da PI: 9.2353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P16550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.4	2.6e-08	75	122	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N +f eL ++l + + +K +K +iL A++ +++L GSMUA_Achr2P16550_001 75 TKACREKIRRDRLNCRFTELCSILDPG---KPPKTDKFAILGDATRLLNHL 122 5678********************9...99**************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.728	71	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-11	72	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-6	75	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.43E-5	75	125	No hit	No description
SMART	SM00353	2.7E-5	77	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-9	78	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGSNPNAGGG WIINYGGFME DVHASDFIWA PQVVDDPSAS SAMLGFDALR KEDNRPNNGN 60 LRKRPRAESC AVPGTKACRE KIRRDRLNCR FTELCSILDP GKPPKTDKFA ILGDATRLLN 120 HLRNEAKKTK ESNEALHDAI KNMKAEKVEL RDERTRLKAE KARIEEMLKV ISTTPQFITQ 180 PAAATFHETS AAAHSKTIPY PNYLPMGMWQ WTAPAAIDTS QDHVLRPPVA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388594.1	1e-173	PREDICTED: transcription factor bHLH115-like
Swissprot	Q9C682	6e-56	BH115_ARATH; Transcription factor bHLH115
TrEMBL	M0S8J6	1e-171	M0S8J6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P16550_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9386	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	8e-56	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]