PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P16590_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 457aa MW: 52022.6 Da PI: 7.19

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P16590_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.2	1.3e-35	43	185	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G++F+Ptd+el+ e+L++kve+ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ GSMUA_Achr2P16590_001 43 LPAGVKFDPTDQELI-EHLEAKVEAAGlkshplI---DefipTIEGEdGICYTHPEKLP-GVTKDGLSKHFFHRPSKAYTTGTRKRRK 125 799**********.99**9995554443...133333666646******.555666799**************7 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l GSMUA_Achr2P16590_001 126 iqtecdlqRGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 185 5555554433788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-37	38	204	IPR003441	NAC domain
PROSITE profile	PS51005	32.83	43	204	IPR003441	NAC domain
Pfam	PF02365	3.5E-16	44	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDLSHISSSN LIDAKLEEHR MCGASQCPSC GHRLDRKPDW VGLPAGVKFD PTDQELIEHL 60 EAKVEAAGLK SHPLIDEFIP TIEGEDGICY THPEKLPGVT KDGLSKHFFH RPSKAYTTGT 120 RKRRKIQTEC DLQRGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN RKPEKTNWVM 180 HQYHLGELEE EKEGELVVSK IFYQTQPRQC HWSDKNAAAA ATVEGMDQRR DSGSGSCSSK 240 EVIGQRDEIS SGPVISGYGG MEMRHHHHLK PDNFSFSPFR KSFEEVSFRC TCYMNSRLIT 300 EKEKENSIEL QMCVLWQQAS LGEAAAKRGE HEHHQIIQEQ QQQQSHGDRS MALHITRPTN 360 LMSTFVSPPP IQQTSIVLDD PYHVSVLQAD KYQVLLHDKF IYHLVLTKLD HRSTSGLEEL 420 IMGCTSSGTK GEALIPQTQE TEWQYSYWSP DNRDHHG

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDLSHISSSN LIDAKLEEHR MCGASQCPSC GHRLDRKPDW VGLPAGVKFD PTDQELIEHL  60
EAKVEAAGLK SHPLIDEFIP TIEGEDGICY THPEKLPGVT KDGLSKHFFH RPSKAYTTGT  120
RKRRKIQTEC DLQRGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN RKPEKTNWVM  180
HQYHLGELEE EKEGELVVSK IFYQTQPRQC HWSDKNAAAA ATVEGMDQRR DSGSGSCSSK  240
EVIGQRDEIS SGPVISGYGG MEMRHHHHLK PDNFSFSPFR KSFEEVSFRC TCYMNSRLIT  300
EKEKENSIEL QMCVLWQQAS LGEAAAKRGE HEHHQIIQEQ QQQQSHGDRS MALHITRPTN  360
LMSTFVSPPP IQQTSIVLDD PYHVSVLQAD KYQVLLHDKF IYHLVLTKLD HRSTSGLEEL  420
IMGCTSSGTK GEALIPQTQE TEWQYSYWSP DNRDHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-12	41	185	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388586.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X1
Refseq	XP_009388587.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X1
Refseq	XP_009388589.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X3
Refseq	XP_018677586.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X1
Refseq	XP_018677587.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X1
Refseq	XP_018677588.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X1
Swissprot	Q9M0F8	1e-147	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M0S8K0	0.0	M0S8K0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P16590_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-140	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]