PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P16730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 208aa    MW: 23312.8 Da    PI: 10.3696
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P16730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-1883116134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            Cs C+ttkTplWR gp+g+k+LCnaCG+++rk +
  GSMUA_Achr2P16730_001  83 CSICKTTKTPLWRGGPRGPKSLCNACGIRQRKAR 116
                            99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-1376118No hitNo description
SMARTSM004012.4E-1777128IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-1581117IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.66281113IPR000679Zinc finger, GATA-type
CDDcd002024.16E-1082112No hitNo description
PROSITE patternPS00344083108IPR000679Zinc finger, GATA-type
PfamPF003207.6E-1683116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLATNLWQTV DQSSDHWISR PTRDQDIGKT IELNWCKDEE RHQWMSSEMR IMKKTTSSED  60
GTPRGCRQTN CSINPPADIT RVCSICKTTK TPLWRGGPRG PKSLCNACGI RQRKARRAME  120
AAARGGGGLI RSDAPTKIRK EKKPNMRRIL PFKKRCKITT ASTSQKQLGV EDVEIGLSSN  180
SAFYEVFPQD ERDAATLLMA LSCGLIRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388563.11e-146PREDICTED: GATA transcription factor 21-like
TrEMBLM0S8L41e-152M0S8L4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P16730_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-24cytokinin-responsive gata factor 1