PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P17070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CPP
Protein Properties Length: 623aa    MW: 68401.4 Da    PI: 8.0755
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P17070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.71.5e-15252290341
                    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            +k+C+Ck+skClk+YC+Cfaag++Cse C C++C N+ e
  GSMUA_Achr2P17070_001 252 QKRCSCKRSKCLKLYCDCFAAGTFCSEVCGCQQCVNRPE 290
                            799*********************************977 PP
2TCR51.32.2e-16337376140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            ++k+gCnCkks ClkkYCeC++ag+ Cs  C+Ce+CkN+ 
  GSMUA_Achr2P17070_001 337 RHKRGCNCKKSLCLKKYCECYQAGVGCSFGCRCEGCKNTF 376
                            589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-15250291IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.651251377IPR005172CRC domain
PfamPF036383.7E-12252288IPR005172CRC domain
SMARTSM011143.2E-17337378IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.2E-12339375IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MRKRLQFEAI ENHKTDGECK KLIKNFICDI TSEEPLEISL HMNTSDPSHV KPIEASGMKQ  60
GSQLISQGHL CKSVDRVDVS GQKKGDSSVT DPRPSGIGLH LNTVGSVGHN NCSMMVQALG  120
KDSCMEEESF LGNSEQISQG SNSELVSPGL TGKISFTLTA NSEKPMPDNT CDDTGDKHLQ  180
NDMMELTISS ISHQTPLSTK PIECSMQPRL TDQYVTPCSL KRPLSVDDSK LNLSSQSSPR  240
KKRKKASDNE GQKRCSCKRS KCLKLYCDCF AAGTFCSEVC GCQQCVNRPE NEDTIHEARQ  300
QIESRNPLAF APKVVLYVSN PPKDSEESTG TTPSSARHKR GCNCKKSLCL KKYCECYQAG  360
VGCSFGCRCE GCKNTFGRKD GKRCADIIEI EHMKSKEQKL VRDPSAENSK EKLVTREVNL  420
HLSPLTPSIQ SSNKSTFEMA REDNMLLVPD DQEIDFDIKV DTFSPGWDGF PDICNFSPLP  480
NPPPSNDGAS VSFKTKEPKI LQTRLFQGSS LVGTPLRWRS SPVTPLPQFG KSKILLEPDS  540
DNGPNKSVGD DAPEVLEDPC SPIKAVTASS PKQKRVSPPK RLFQETRSSS SSGLRSGRKF  600
ILQSVPSFPP LTPYSKNSRG SGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1825237411120Protein lin-54 homolog
5fd3_B4e-1825237411120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388527.10.0PREDICTED: uncharacterized protein LOC103975320 isoform X1
RefseqXP_009388529.10.0PREDICTED: uncharacterized protein LOC103975320 isoform X3
RefseqXP_018675959.10.0PREDICTED: uncharacterized protein LOC103975320 isoform X3
TrEMBLM0S8P80.0M0S8P8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P17070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-44TESMIN/TSO1-like CXC 2