PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P17810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 192aa    MW: 20807.5 Da    PI: 10.5397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P17810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1866115355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+++AeIrdp  ng  +r +lg+f tae Aa a+++a+ +++g
  GSMUA_Achr2P17810_001  66 YRGVRQRP-WGKYAAEIRDPGRNG--ARLWLGTFETAEAAAMAYDRAAFRIRG 115
                            9*******.**********95554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1365115IPR001471AP2/ERF domain
PROSITE profilePS5103224.52665123IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2365124IPR016177DNA-binding domain
SMARTSM003801.5E-3965129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3265123IPR001471AP2/ERF domain
CDDcd000183.16E-2065123No hitNo description
PRINTSPR003677.2E-116677IPR001471AP2/ERF domain
PRINTSPR003677.2E-1189105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEMHPDLAYL EIIRRYLLEE ELTTTTTTSG ADGGSSNEPP NAVTKVAPPQ QQMPPQRTAR  60
ERGRNYRGVR QRPWGKYAAE IRDPGRNGAR LWLGTFETAE AAAMAYDRAA FRIRGSRALL  120
NFPLLVSSQD AAAKRAATET PLVGTNKRRK GVAVSVSSAG SELTVQKNRS GLETSSGLLI  180
LGSELATTVG HI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3562128268ATERF1
3gcc_A2e-3562128268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677690.11e-102PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLM0S8X21e-136M0S8X2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P17810_0011e-137(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-28ethylene responsive element binding factor 2