PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 464aa    MW: 50614 Da    PI: 6.7387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13308353454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  Av YI++L
  GSMUA_Achr2P18140_001 308 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 353
                            799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-4263217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-15307358No hitNo description
SuperFamilySSF474595.23E-18307369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17308367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNLWADDNAS MMEAFMASVD LPGFSWAAVP PTPTPPCAAA SSSLDHPAAA ATPAPAYFSQ  60
ETLQQRLQAL IEGARESWTY GIFWQSSVDA ATGASFLGWG DGYYKGYEED KRKQRVAGAA  120
SAAEQEHRKC WFFLVSMTQS FVNGGGLPGQ AFYTGAPAWV TGADRLAAAP CDRARQAQLF  180
GLQTMVCVPV GSGVLELGST DVVFHSPEIM GKIRVLFNFS SPDAPSFQRT HNQPQQQLHQ  240
SSASDPHTHL FVSKKFNLSE FASNGSRNKR STGATSRVSN SDEGMISFSS ASARPPSDPA  300
NGREEPLNHV EAERQRREKL NQRFYALRAV VPNVSKMDKA SLLGDAVSYI NELRSKLETL  360
EIDKEEMMNG SGGDRCHGVE LEVKILGSEA MIRLQCLKRN HPAAKLMAAI RDLDLDVHYA  420
SVSVVEDLMI QQATVKMSPS RTYTPEQLRA ALYSKLAAEA PISR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-48582204195Transcription factor MYC3
4rqw_B7e-48582204195Transcription factor MYC3
4rs9_A7e-48582204195Transcription factor MYC3
4yz6_A7e-48582204195Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094338.11e-177LOW QUALITY PROTEIN: transcription factor MYC2-like
SwissprotA0A060KY901e-145MYC1_SOLLC; Transcription factor MYC1
TrEMBLM0S9050.0M0S905_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-127bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]